Sentence examples for complete aligned from inspiring English sources

We also assembled three 'species' datasets that consisted of all the complete aligned genome sequences from strains of the species Turnip mosaic virus (TuMV), Potato virus Y (PVY) and Plum pox virus (PPV); these datasets were of 61, 41 and 22 sequences respectively.

Based on the complete aligned data sets, we further conducted Maximum Likelihood (ML) tree reconstructions with the RAxML v7.2.6 software package [ 31- 33] with (1) a standard DNA model setups and (2) 13 mixed RNA/DNA model setups.

Only sequences that were complete and aligned along at least 75% of the length of the query were selected.

This is only done if the mapping of the site is near complete; partially aligned sites are not used to infer sites on protein sequences.

MafFilter was used to analyse the complete Gorilla genome aligned with other Primates (2Gb alignment) [ 9], as well as resequencing data of 27 individual genomes from the fungus Zymoseptoria pseudotritici (40Mb alignment, E. Stukenbrock, pers. communication).

To assess the utility of complete cp genome sequencing in species identification and population genetics, the aligned complete cp genome sequences were used to calculate p-distance with MEGA5 [ 80].

The two complete genomes were aligned using MAUVE [50] and ClustalX.

Because the data for 6V, 7V, and Pbo-likeV were not complete sequences, we aligned them with other parvoviruses.

Complete sequences were aligned, assembled and compared using the Clone Manager program.

Both MHP and "complete" datasets were aligned in ClustalW 1.8 [ 58] independently using default parameter settings.

Specifically, both LTRs of the complete elements were aligned by CLUSTALW2 with default parameters.