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Although in our system query flock technique can be applied to a data base schema including both the intensional data base (IDB) or rules and the extensible data base (EDB) or tabled relations, we have designed an architecture to compile query flocks from datalog into SQL in order to be able to use commercially available data base management systems (DBMS) as an underlying engine of our system.
The sisters spent six months compiling the queries that are suggested most frequently, according to information on the habits of Web searchers collected by consultants in a hundred cities across North America.
At this point, the subqueries are used to compile the queries that will be sent to the data sources, which can either be database servers or other BioMart servers.
The database was compiled by querying specialized internet sites (leading sources for news releases and regulatory filings from companies throughout the world such as Business Wire and PRNewswire, as well as the companies' internet sites) for alliances made in this industry between 2001 and 2006.
Genes characterizing an OCT4/SOX2/NANOG expression signature [11] were compiled and queried using NetAffx™ from Affymetrix (http://www.affymetrix.com/analysis/index.affx) to search for corresponding probe set annotations in the HG-U95A and HG-U133 plus 2.0 platforms used in the lung cancer microarray studies by Bhattacharjee et al. [12] and Bild et al. [13], respectively.
A second set of putative promoters was compiled by querying IgRs with Fuzznuc [ 48] using available S. meliloti consensus sequences as input.
In this case we compiled a query library containing the 5' LTR region of each of the 7,299 full-length proviruses and performed a BLASTn search against every genome.
The HCC-responsive set (HCR) was a compendium of DEGs reported in HCC studies, compiled by querying the gene set database MSigDB [ 48] with the keywords "hepatocellular AND carcinoma".
A union and unique set of variants, which we referred to as LD80, was compiled from these queries for each GWAS SNP set.
DunceCap: Compiling Worst-case Optimal Query Plans.
Queries are compiled into MapReduce jobs to be executed on Hadoop.
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