Exact(4)
Finally, Craig and coworkers tested the efficacy of MRC docking using BACE1 and cAbl with a challenging and purposely compiled benchmark [29].
Among the 238 diseases, 145 diseases have at least one true positive compound in our compiled benchmark standard and were further evaluated (see Additional file 1: Table S2).
In total, 145 of the 238 diseases have at least one true positive compound in our compiled benchmark standard and thus can be evaluated (see Figure 1 and Additional file 1: Table S2).
When the performance of TSSvote was tested by a compiled benchmark set of 21 experimentally determined human and mouse miRNA TSSs (Additional file 6: Table S6), TSSvote predicted 52% of these test TSSs within 500 bp and 81% of them within 2500 bp, outperforming all other currently available methods tested (as measured by the number of miRNA TSSs predicted within a given error range; Figure 3B).
Similar(56)
Yang et al. [ 13] compiled a benchmark set of 27 known cooperative TF pairs from the MIPS transcription complex catalogues [ 21].
This way of compiling a benchmark, known as value weighting, may be the most widely used.
The financial sector fears mayhem from a rapid switch to a new system for compiling benchmarks but Wheatley said changes would have to be phased in.
The benchmark, compiled by WM/Reuters for the last 20 years, is used by fund managers wanting to know how their investments are performing.
The third data set used in this study is Directory of Useful Decoys (DUD), this data set has recently been compiled as a benchmark data set, specifically for docking methods.
Based on these results, we have compiled an Eterna100 benchmark of 100 secondary structure design challenges that span a large range in design difficulty to help test future efforts.
The compiled non-redundant benchmark dataset is used to derive this system.
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