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In order to compare AMP versus non-AMPs, we also compiled as set of non-AMPs as follows: We used from Uniprot all protein sequences of length 10 212 (same length distribution as the AMP sequences) whose ontology annotation does not contain any keyword related to antimicrobial activity (e.g. Antimicrobial, Antibacterial, Antifungal, Fungicide, Defensin, Antiviral, etc).
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Guided by recent reviews on cardiovascular disease biomarkers [ 17, 18], a list of known HF biomarkers was compiled as the initial set of input information to our analysis framework.
Reviewing the literature, we compiled a set of 19 cross-reactive epitopes in Table 1.
We compiled a set of surface membrane proteins (SMP) that are known to interact with HIV.
For this purpose, we compiled the set of protein complexes detected by Arifuzzaman et al. [24].
We compiled a set of 890 true drug-disease pairs from two different sources (see Methods) as a benchmarking standard.
We have compiled a set of high quality HKGs that should provide higher and more consistent expression when used as references in laboratory experiments than currently used HKGs.
We have compiled a set of requirements from different pseudonymization schemes.
From these two sources, we compiled a set of fundamental requirements for pseudonymized data management.
Example 3: The study compiled the set of main neurological manifestations and their frequency.
We compiled a set of 216 orthologous proteins from 20 metazoan species and yeast.
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