TF, Transcription Factors DBD, DNA-Binding Domain HMMs, Hidden Markov Models SCOP, Structural Classification of Proteins HTH, Helix-Turn-Helix TUs, Transcriptional Units Crp, CcpA, Crc, Catabolite response regulators σ, Sigma factor S. M-C carried out the compilation of DNA-binding TFs from diverse DBs.
Nybom (2004) who conducted an analysis on a compilation of different DNA markers for estimating intraspecific genetic diversity in plants calculated an average of 54.9 polymorphic markers per study.
Ito, J. & Braithwaite, D.K. Compilation and alignment of DNA polymerase sequences.
He also found a good correlation for 10 bp repetitions of the dinucleotides GG, TA, TG, and TT in the modest compilation of 30,000 bp of DNA sequence from different eukaryotes available at that time.a Within the 10 bp motif these dinucleotides were proposed to help position nucleosomes.
A compilation of the data characterizing the DNA-binding transcriptional regulators of each species is provided as supplementary material (see Additional files 1, 2, 3 and 4).
The present study is based on the analysis of datasets of free and protein-bound DNA crystal structures, and from a compilation of NMR 31P chemical shifts measured on free DNA in solution on a broad range of representative sequences.
The design of the EmbryoGENE (http://embryogene.ca) DNA Methylation Array (EDMA) was based on a compilation of methylation-sensitive genetic loci found previously to be involved in early embryonic development [ 27].
DNA repair was the only specific functional category of intellectual disability genes in the compilation of Inlow and Restifo (2004) to exhibit an enhanced signal of positive selection.
Primary mitochondrial respiratory chain (RC) disease represents a complex compilation of multi-systemic disorders caused by pathogenic mutations in more than 60 nuclear and all 37 mitochondrial DNA-encoded genes (Haas et al, 2008).
