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Next, we create a database containing t-values that quantify the differential expression of a large number of regulons across a compendium of expression data for the yeast S. cerevisiae.
Hughes et al generated a compendium of expression profiles of genetic mutations or drug treatments affecting Saccharomyces cerevisiae cells.
We identified regulators of tmem59 during the differentiation of mouse NSCs from a compendium of expression profiles.
GRNs related to tmem59 were constructed on a compendium of expression profiles by the parallelized SWNI algorithm.
We provide a molecular toolkit via a compendium of expression data that can help unravel mechanisms of hypothalamic TRH neuron development.
We analyzed the behavior of the genes in the cholesterol degradation pathway in a compendium of expression data collected for M. tuberculosis.
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In most practical situations, based on publicly available compendiums of expression data, this may not be the case.
To assign Functional Associations by Response Overlap (FARO) between an experimental factor and the factors assessed in a compendium of gene expression responses, a query response of differentially expressed genes from one study was compared to the responses of the compendium (Figure 1).
The Nottingham Arabidopsis Stock Center NASCcompendiumium of global expression data (http://affymetrix.arabidopsis.info/) is a repository of microarray gene expression data from numerous studies [37].
In order to evaluate our artificial human RH system against an in vivo biological data set, we compared the gene expression from the RH experiments to the human Novartis SymAtlas [ 22], a compendium of gene expression across multiple tissues.
The Human Gene Expression Index (HuGE Index) [ 4] is a publicly available resource which serves as a compendium of gene expression in normal human tissues.
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