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An exhibition currently at the Grand Palais in Paris spans the six periods in Hokusai's life, presenting a massive compendium comprised of over 500 works, many of which likely won't make it out of Japan again.
The work is based on a yeast transcriptome compendium, comprised of 170 microarray measurements (Knijnenburg et al. manuscript in preparation).
After merging technical replicates the compendium comprised 733 individual transcriptome measurements with similar numbers of arrays associated with LPIs, MPIs, and HPIs.
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As the Cytokine compendium comprises time series data for each combination of cytokine treatments, it was important to confirm that the low-dimensional embedding recovered by Isomap is not solely governed by correlation between consecutive time points for each treatment condition.
The yeast compendium dataset comprises 9,335 probesets and 904 samples from experimental and observational data from anaerobic and aerobic growth conditions, gene knockout and drug perturbation experiments.
The E. coli compendium used here comprised of a total of 759 RMA-normalized E. coli expression arrays, which are also publically available at the M3D database.
This re-organization resulted in a compendium (meta-dataset) comprising 989 unique adenocarcinoma samples from seven independent cohorts.
In our analysis of the Cytokine compendium each measurement comprises a single treatment condition at a distinct time point (e.g. TNF 100 ng treatment at 5 min).
The compendium of chemostat-based transcriptome datasets is comprised of 170 microarray measurements, which have been performed over the past years in the Kluyver Centre's yeast research programme.
The dataset samples included in the compendium were grouped into 6 Experiment Sets as follows: 1) Breast Cancer: comprised whole-genome microarray datasets of breast tumors; 2) Normal Breast: comprised whole-genome microarray datasets of normal tissue from invasive ductal or lobular breast carcinomas.
CF-associated bronchopulmonary disease, the principal cause of morbidity and mortality, comprises a compendium of alterations including airway obstruction by viscous mucus and chronic inflammation with recurrent bacterial infections, mainly by Pseudomonas aeruginosa.
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CEO of Professional Science Editing for Scientists @ prosciediting.com