Sentence examples for compatible reading from inspiring English sources

Since all translocations in TICdb are mapped to specific introns or exons, we were able to check whether the exons flanking a translocation breakpoint have compatible reading frames, that is, if the last exon of the 5' partner gene ends in the same reading frame in which the first exon of the 3' partner gene starts.

Deletions in this exon always result in a compatible reading frame with the corresponding exons of FIP1L1 (exons 10, 11, 12 and 13 of FIP1L1 transcript ENST00000358575, which end in reading frames +3, +1, +2 and +3 respectively, in version 38.36 of Ensembl), leading to in-frame fusion transcripts in all four configurations.

The finding that 98% of gene fusions generate transcripts that can be translated as in-frame protein products confirms that reading frame conservation is of great functional importance in oncogenic fusion proteins, since the expected frequency of compatible reading frames between two random exons (assuming equal frequencies of +1, +2 and +3 reading frames) is one third.

Given a set of paired-end reads R, maximizing the number of compatible reads with P is equivalent to maximizing), ∑ p ∈ R q p ~ P. For each gene, paired-end reads that are mapped to only one segment (i.e., | IS p| = 1) are excluded from R, since these reads do not provide any useful information in the assembly.

Also, although the pipeline that was built around SPANNER was able to utilize the SR signal, its split alignment algorithm is only compatible with reads collected using the now defunct 454 sequencing technology.

The ZI was identified according to a compatible depth reading, spike latencies consistent with a polysynaptic response (on the order of 10 ms; Figure 4B), and a receptive field that responds to contralateral whisker stimulation, which ZI is known to possess (Nicolelis et al., 1992).

Each read is processed as follows: If the isoforms compatible with the read correspond to nodes in more than one tree unite the corresponding trees.

Our protocol ensured that only those reads compatible with a gene model were used to evaluate the role of a genome annotation in RNA-Seq data analysis.

EXPRSS Tag-seq was initially designed with Illumina single end adapters that are compatible with single read flow cells of GAII and Hiseq.

Primers were designed to have approximately same length of nucleotides, GC-content, a minimum number of degenerate bases, and to produce amplicons between 200 500 bp long, compatible with the read length of the 454 GS FLX Titanium Sequencer.

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