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Significance levels for multiple comparisons were corrected by Bonferroni's method.
As the computation of each S-value involved several sensors from the neighborhood (see above), the P-values of the sensor-wise comparisons were corrected by means of the BH false discovery rate method [51], taking into account the uncorrected P-values of each sensor's first- and second-order neighbors.
The multiple comparisons were corrected by a randomized test based on statistical non-parametric mapping (SnPM, number of randomizations: 5000) [ 35].
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The significance level for all comparisons was corrected by the false discovery rate (FDR) [21].
Haplotype analysis with sliding windows was also performed with PLINK, and multiple comparisons was corrected by generating empirical P (Pemp) values based on 50,000 permutations.
Multiple comparisons were corrected for by the Bonferroni correction, giving an adjusted significance level of 0.017.
Multiple comparisons were corrected for by the Bonferroni correction, giving an adjusted significance level of 0.017 (α = P/3).
Differences in probability of survival between salmon of farmed, hybrid or wild origin were investigated by re-running the final model while excluding one of the genetic origins at a time, while multiple comparisons were corrected for by the Bonferroni correction, giving an adjusted significance level of 0.017.
Differences in body weight at termination between salmon of farmed, hybrid or wild origin were investigated by re-running the selected models while excluding one of the three genetic origins at a time, while multiple comparisons were corrected for by the Bonferroni correction, giving an adjusted significance level of 0.017.
The p-values generated in these comparisons were corrected for multiple testing by controlling the False Discovery Rate (FDR) with the Q-value procedure in the Q-value 1.0 package (default settings) of the R software [26].
The data were analyzed by analysis of variance for repeated measurements, followed by post hoc analysis for pairwise comparisons, and were corrected by Tukey test or paired t-test when indicated.
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