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In the present study, a simple comparison of lists of differentially expressed genes indicated that AC and AM had the highest number of genes in common (Table 1).
Fitted values for each sample were then loaded into GeneSpring GX (Agilent Technologies, Stockport, UK) to allow for easy comparison of lists of differential genes.
Model-based meta-analysis approaches can rise above seemingly weak consistency among studies based on simple comparison of lists of genes.
Comparison of lists of genes with significant differential expression across studies failed to identify genes with consistent patterns of expression that were below the selected significance threshold, or identified genes with significant yet inconsistent patterns.
Typical integration of information from multiple microarray studies relies on a simple comparison of lists of genes within study considered to be differentially expressed at a predetermined statistical threshold [ 1].
Statistical comparison of lists of differentially expressed genes to in-house curated lists of functionally related genes was performed using the 'find similar entity lists' tool of Genespring 11.
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He conducts a number of studies, from a comparison of listing fees to migration analysis of companies that switched, and then recommends a course of action.
Comparisons of lists of overexpressed genes were performed using Venn diagrams in GeneSpring GX.
With the ability to identify thousands of proteins in a single experiment, MS-based proteomics makes it easy to generate lengthy protein catalogs, but qualitative comparisons of lists of proteins is less informative.
This is not possible by simple comparison of reaction lists or enzyme lists.
This approach permitted a granular multi-study comparison of gene lists and functional gene ontology classifications.
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comparison of samples
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comparison of rates
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comparison of means
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comparison of data
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