Sentence examples for comparison of alignment from inspiring English sources
The comparison of alignment effect is investigated by using both vertically aligned and randomly oriented CNTs.
Li and Homer [ 24] provide a detailed comparison of alignment algorithms.
We also aligned reads using Bowtie [ 33] with the setting -best to both genome and transcriptome (from Ensembl for mouse, GENCODE for human), for comparison of alignment performance.
At CRS4 SeqPig is already used routinely for several steps in the production workflow; in addition, it has been successfully used for ad hoc investigations into data quality issues, comparison of alignment tools and reformatting and packaging data.
DMR detection has been attempted by two-step procedures: first, differentially methylated cytosines (DMCs) are detected by comparison of alignment results between samples; then, DMCs at neighbor positions are grouped as contiguous DMRs by certain distance criteria.
PhyleasProg contains some filters implemented, such as the capability to filter groups based on the comparison of alignment lengths before and after sequence trimming, removing groups with very short alignments after this procedure, and splitting of mixed groups in 1-1 orthologs and paralogs, evaluating each gene partition separately.
COACH (Comparison of Alignments by Constructing Hidden Markov Models) aligns two multiple sequence alignments by constructing a profile HMM from one alignment and aligning the other to this HMM; it is freely available as a stand-alone version.
(C ) Comparison of alignments from the 4701 puzzles that had all high-scoring players aligned different to the software: the left panel is based on percent identity between sequences; the right panel is based on the Fraxinus game score (see Fraxinus game setup in 'Materials and methods').
For example, we carried out a comparison of alignments produced for data from the human intestinal microbiota [28].
In addition to a comparison of alignment-based methods, this example also demonstrates the benefits of cross-species analysis.
The comparison of alignment-mapped human and chimpanzee RMSs can lead to skewed results when comparing single CpG sites directly.
