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Comparison of abundance and stability among all sites and years demonstrated that control severely fractures social groups, but that the effect of control on abundance was neither consistent nor predictable.
Comparison of abundance ratios obtained by ICAT and by Western blot analysis has also consistently shown similar values [ 59].
We investigate the consistency of transcript abundance measurements across the three technology platforms using comparison of abundance expression levels and expression level ratios.
NSAF allows the comparison of abundance of individual proteins in multiple independent samples and in multiprotein complexes (Florens et al., 2006 ; Paoletti et al., 2006 ).
Data in Fig. 2a and b were quantile-normalized by the TCGA pipeline, allowing comparison of abundance of a particular transcript (such as total ELF5) between samples.
Normally two levels of comparison are performed, viz., comparison of abundance of functional families and pathways, and estimation of statistical parameters to ensure that the observed differences in abundance are not merely chance occurrences.
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A comparison of abundances revealed 1,650 transcripts that were differentially expressed (fold-change ≥ 2) due to an N-deficiency.
Vectors resulting from the comparison of abundances (e.g., Prevotella relative abundance) between groups are used as input to linear discriminant analysis (LDA), which produces an effect size.
The same logic applies to the interslope comparisons of abundance.
To test our hypothesis, we make comparisons of abundance expression level and comparisons of expression level ratios.
Based on the comparisons of abundance of each individual OTU and several stringent criteria, we identified up to 51 (34 bacterial and 17 fungal OTUs) that were most likely to be involved in affecting yield decline of strawberry.
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