Through a series of segmentation experiments, we examine the effectiveness of the C-CHMM in comparison with closely related models.
Because the idea of comparison is closely tied to the topic of value incommensurability, this has led to use of the term "incomparable" alongside "incommensurable" in the literature.
PCR primers that selectively amplify Halicephalobus DNA were designed and tested based on comparison of closely related nematodes as inferred from phylogenetic analysis.
In our view, the positional homology alignment is most useful for comparison of closely related microbes for several reasons.
The HVS-I motif searching and haplogroup-directed comparison with closely related sequences from other databases led us to tentatively assign each mtDNA to a haplogroup.
We also examined genomes with unusual PGM composition in comparison to closely related species, and genomes with two or more dPGM genes, for candidate LGT events.
In other cases, such data were gained from aa sequence based comparison of closely related proteins, such as for the CzcD protein (Rmet_5979) that greatly resembles the recently studied E. coli YiiP zinc transporter protein [103], [104].
Based on automated genome sequence comparison of closely related Saccharomyces species, the translational start site of MCA1 was recently moved downstream to the third AUG, giving rise to the short version of the Mca1 protein (432 amino acids) [15], [16].
Comparison of closely related structures is useful in understanding how proteins accommodate slight alterations in amino acid sequences and the analysis of such changes is vital to the identification of protein attributes that could contribute to disease or treatment.
Some of these assemblies benefited from comparison to closely related species to improve the assembly.
