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The same scoring system was used for all markers to allow direct comparison between markers.
If it were possible to compare the results of renal biopsy specimens according to the grade of adiponectinuria or albuminuria, we could obtain more information on comparison between markers for the detection of diabetic nephropathy.
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The expected value was estimated with Loess curve based on a total of 2 368 859 comparisons between markers.
We calculated Ne for three data sets: (i) all RAD SNPs that aligned to the linkage map, (ii) all RAD SNPs that aligned to the map with pairwise comparisons between markers on the same linkage group removed, and (iii) the 39 SNPs from Templin et al.
The same scoring system was used for all markers to allow direct comparison between the markers.
For direct comparisons between marker panels, all sensitivity results correspond to a 98% fixed first-line specificity (referral rate 2%).
In the inferior portion of the graph, the majority of the pairwise comparisons between marker loci indicate independence in CC corex, represented by the white boxes.
Comparisons between marker distribution and physical location reveal regions of greater and lesser recombination, as well as regions exhibiting significant segregation distortion.
Therefore, our interpretations of the map distance differences and recombination events are based on overall patterns of linkage group size and marker clustering, rather than direct comparisons between marker pairs.
Additional file 1: Comparison between the markers identified by SLAF-seq and SSR assay.
However, to date there is no study with detailed comparison between these markers.
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