Additionally, in our experience, the SSM/PDBeFOLD server consistently produces good results when comparing distant proteins.
By comparing distant species, we were able to identify new UCEs in human and fruit fly.
The cell provides a simple evolutionary laboratory and allows an internal control of tools used to compare distant sequences.
The birth-and-death process has been hypothesized to have a high turnover rate for class I B genes in mammals [ 25, 26], leading to a lack of orthology when comparing distant species.
It has been commonly assumed that phage evolve in a modular fashion, by shuffling conserved cassettes of genome regions due to the observed similarity among these regions when comparing distant phage (Casjens 2005).
The Pairwise ATR (PATR) is a string X, such that for every pair of indices i, j∈[1,.. t] with i ≠ j we have ϕ(x i, x j )≥η ij, where η ij is set to be a monotonically decreasing function of | i − j|, thus allowing more slackness when comparing distant copies of the basic motif.
However, at the landscape scale, the honeybee and the other bee species were less abundant in shrublands adjacent to Hedysarum crops compared to distant ones; their visitation rates showing a similar trend.
Takata described "localised treatment" as 'hands-on work,' compared to distant or "absent healing".
The putative miRNA response elements (MREs) of miR-26b were also found in the 3'UTRs of EphA2 in other vertebrates when compared across distant species (data not shown).
