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We implement the new high-order MHD solver in the adaptive mesh refinement code FLASH where we compare the divergence cleaning efficiency to the constrained transport solver available in FLASH (unsplit staggered mesh scheme).
Bustamante et al. (2005) also applied this approach to compare the divergence and polymorphism data of human and chimpanzee to identify signatures under positive and purifying selection across human genome.
One way to reject incomplete lineage sorting as a possible cause of incongruence could be to compare the divergence times of the conflicting nodes.
To compare the divergence between the two Etnean species from their outgroup S. vernalis, genes were concatenated and subjected to Tajima's relative rate tests (Tajima 1993) implemented in MEGA 5 (Tamura et al. 2011).
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Comparing the divergence times for ORF1 versus that for ORF2.N shows the divergence times for genotypes 1, 3 and 4 are on average 48, 14 and 10 years older those calculated for ORF2.N, respectively.
The present study compared the divergence of intraspecific sequences from specimens that in a high proportion originated from widely separated geographic regions, and confirmed that cox1 sequence variation was able to identify more than 98% of the pairwise sequence divergences correctly as corresponding to variation within species.
When comparing the divergence of the IR and red beams, the divergence is slightly increased for red.
We compared the divergence of Alu elements located at the junctions with the divergence of the corresponding internal Alus in the pairing duplications [ 40].
Once we identified paralog origin, we then estimated whether the LGD events were occurring before or after the WGD by comparing the divergence between the two groups.
To study the evolutionary impact of local duplications of ohnologs, we first compared the divergence of ohnologs between locally duplicated and nonlocally duplicated ohnolog pairs.
Previous analyses comparing the divergence of simple sequences flanking regions between human and mouse also associated the observed increased divergence to relaxation of selection (Hancock et al. 2001; Faux et al. 2007).
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CEO of Professional Science Editing for Scientists @ prosciediting.com