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In 2004, the HUPO Proteomics Standards Initiative developed and published the PSI-MI XML1.0 format for molecular interactions [ 1] as a community format for the exchange of protein interaction data.
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Summary: The Systems Biology Markup Language (SBML) is an established community XML format for the markup of biochemical models.
The reconstruction is described and made available in Systems Biology Markup Language (SBML) [ 5], an established community XML format for the mark-up of biochemical models.
Data were provided in the imzML format, an open and community-accepted format for exchange of imaging MS data, and for each spectrum the user-defined parameters of its location in 3D space were introduced.
In this way, a similar approach would also be possible for other systems biology community formats.
But, as StartupStats pointed out, while the team is not explicitly saying it, the potential here is to offer its community a standardized format for the oft-used pitch deck, which startups use to introduce their business to investors.
Following the method described in the Atlas biological data warehouse [ 26], we designed data loading applications for each PPI database and a relational data storage system compliant with the Proteomics Standards Initiative Molecular Interaction Standard (PSI-MI) controlled vocabulary [ 10], a community-standard XML format for the presentation of protein interaction data.
A cross-sectional survey was conducted using a computer-assisted, self-administered format for community residents aged 25 50 years.
Our Start/Sit Challenge provides a fun format for individuals, experts and communities to see how they stack up against the experts.
The microarray community has developed MAGE-TAB (Rayner, 2006), an annotation format for microarray data.
We have made this available in BioC format for use by the text-mining community.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com