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Common search parameters are taxon name, collector, collector's number and country.
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Here, processed MS/MS spectra were first searched using PLGS software (using the same search parameters as described above) against a subdatabase containing common background proteins (human keratins and trypsin).
1) Keyword Search Searchh by keyword (using "advanced search" parameters) to find those in your network with whom you have something in common.
Many apparently high quality spectra are not matched for a number of reasons, the most common of which is thought to be the omission of some post-translational modifications in the database search parameters.
Pay attention to your search parameters so that there are no rude surprises.
Detailed search parameters are printed in the search output XML files.
A fragment ion error tolerance of 0.03 Da was also included in the search parameters.
The following search parameters were used: Parent mass error, 20 ppm.
The search parameters were as follows: Variable modifications: Carbamidomethyl (C), Oxidation (M); Peptide tol.
Initial search resulted in a single shortest tree of 139 steps (tree search parameters: Implicit Enumeration and New Technology search; both methods yielded the same result).
"The search parameters were established with Mr Garcia's office.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com