Sentence examples for common energy minimization from inspiring English sources

Therefore, a combined segmentation approach has been designed that combines both elements within a common energy minimization framework.

The partial folding caused by the conventional energy minimization method is common to the 100 ligands under study, as evident from the observation that the potential energies of all 100 ligand conformations obtained using the energy minimization without the NMA monitor are by average 1.1 kcal/mol lower than those using the NMA monitor except for the ligand of crystal structure 3STD (Figure 5).

To identify common secondary structural motifs, RNA sequences were folded using the energy minimization algorithm of Mfold [58].

Energy Minimization: In this step the actual energy minimization process is performed and corresponds to the Gromacs command 'mdrun'.

Free energy minimization modeling suggested that different types of IRESs could have a common three-dimensional structure core [38], providing the structural platform for bindings of ITAFs to different IRESs [39], [40].

For example, Dynalign (Mathews and Turner 2002) combines free energy minimization and comparative sequence analysis to find a low free energy structure common to two sequences without requiring any sequence identity.

Fast approximate energy minimization via graph cuts.

For each run, 10,000 rigid-body solutions were generated by energy minimization.

The 2D structure of PSTMB was converted to energy minimization of the structure by using OpenBabel in Pyrx.

The hydrated structure was again equilibrated by energy minimization and NVT ensemble (T=300 K, t=300 ps) simulations65.

During energy minimization, the N1 conformation converged to form a cis Hoogsteen Hoogsteen base pair with N3.