Sentence examples for common conformation from inspiring English sources

Molecular dynamics simulations showed that the binding pocket in the three MDM4 structures converged to a common conformation after removal of the ligands, indicating that the differences are due to induced fit.

The two simulations did not converge to a common conformation; moreover, the final complex of A2 resulted in a partially unfolded structure.

The "common" conformation, which represents the intrinsically normalized crystal structure, likely represents the predominant state of packing at the fibril surface.

However, we recognize that there is likely to be a continuum of packing arrangements between common and wide states, albeit highly biased towards the common conformation – or else the collagen fibril lattice could not be crystalline by definition.

This point is emphasised for the common conformation d-band binding site, where the collagen monomers have much less contact with decorons LRR's 2 through 8 (the central section), than at the e1-band receptor site.

Furthermore, the wide fibril surface packing conformations are dissimilar to the predominant, common, conformation in that the molecular packing of the collagen molecules presents significant differences in the placement of the collagen receptor sequences.

Here, we use a clustering algorithm to analyze 76,533 all-trans segments from protein structures solved at 1.2 Å resolution or better to create a purely φ,ψ-based comprehensive empirical categorization of common conformations adopted by two adjacent φ,ψ pairs (i.e., 2 motifs).

Figure 4 shows a comparison of the decoron curvature from the initial crystal structure through to the final docked wide and common conformations.

On visual inspection, no clear interpretation of the projected axes emerged but the points of meeting for trajectory 2 and 3 showed a series of two-helix conformandons and a common flipped conformation (marked on Fig. 9).

These single-stranded DNA molecules (ssDNA) have no single common shape, but some conformations are more stable than others.

By using Flory's RIS model, it was found that in final isotropic state, the most common conformers are ttgg and tttt, corresponding to helical and planar zigzag conformations, respectively.