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The median physical-to-genetic distance ratio in common bean (based on soybean physical distances) was ~120 kb/cM.
We identified highly-conserved and highly-divergent gene classes between soybean and common bean based on CSH of common bean cRNAs to the soybean GeneChip.
In this study, we took advantage of the nearly full genome sequences now available for soybean, Medicago truncatula and Lotus japonicus [ 40, 41] to conduct macrosynteny analysis with common bean based on homology searches for the sequenced markers on our genetic map.
The second of these QTL was associated with seed iron accumulation QTL but was not associated with the in silico or genetic map position of FRO orthologs in common bean based on new markers and synteny mapping with soybean and medicago.
This study creates a transcript map for common bean based on markers evaluated with SSCP gels which was found to be an easy to use marker system to screen for single base substitutions and SNP polymorphisms as well as small insertion-deletion events.
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In that study, the authors assigned linkage groups to common bean chromosomes based on previously mapped single copy RFLP sequences used as FISH probes.
The uniformity of the BES-SSR loci across the genome may be related to the fact that the BAC-ends were a representative sample of the entire genome and to the similar and uniform physical size of common bean chromosomes, based on cytogenetic study by Pedrosa-Harand [ 41].
The first core genetic linkage map of common bean was based on a recombinant inbred line (RIL) population resulting from the cross between representatives of the Mesoamerican (BAT93) and the Andean (Jalo EEP558) gene pools, which included 194 restriction fragment length polymorphic (RFLP) markers [ 25].
Pioneering the use of these tools in conservation, Jones et al. [25] successfully predicted the location of populations of wild common bean (Phaseolus vulgaris), based on climatic suitability.
The PvRGLs were mapped to common bean linkage groups based on the syntenic blocks between common bean and soybean according to McClean et al. [ 48].
In this study, Illumina's sequencing by synthesis (SBS) technology was used to examine conserved, novel and species-specific common bean miRNAs comprehensively based on small RNA libraries generated from leaves, roots, seedlings and flowers.
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