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The Confab distribution contains two command-line applications: confab and calcrmsd.
It's verbose, combines the worst of both worlds between static and dynamic typing by having a hobbled but extremely clunky type system, and mandates running on a VM that has a macroscopic startup time (not an issue for long-running servers, but painful for command-line applications).
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You may install by typing "install Devel::NYTProf" in the 'cpan' command-line application, or manually by downloading the tarball from CPAN.
QsarDB workflow is a command-line application for generating and optimizing common chemical structure representations [20].
All models are freely available as an open-source, command-line application called OPEn structure activity/property Relationship App (OPERA).
For experts, SOMA2 provides a framework to make virtually any command-line application or combination of applications easily accessible to the (naïve) users.
We processed the GNSS analyses for the shipborne observations using RNX2RTKP, a command-line application for post-GNSS processing of RTKLIB version 2.4.2 (Takasu 2013).
The QsarDB Toolkit [20] contains a command-line application for defining and calculating descriptors using the CDK chemoinformatics library (see example in Additional file 1, Section 2.4).
All 13 models were implemented in MATLAB and compiled into OPERA, a standalone command-line application for Microsoft Windows and Linux [68, 69].
We present Confab, an open source command-line application for the systematic generation of low-energy conformers according to a diversity criterion.
All models are freely available as an open-source, command-line application called OPERA (OPEn structure activity/property Relationship App) [68, 69].
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