Sentence examples for command lines for from inspiring English sources
Although MicMac by default is based on simplified command lines, for some processes – i.e. image measurements, visualization of the results – a graphical user interface (GUI) is available.
Command lines for execution of the two steps are shown in Supplemental Material.
The filter, for use on OvidSP™, consists of nine command lines for searching free text words in the title, abstract and MeSH of a paper.
The detailed command lines for the installation and execution of JointSNVMix, as well as other sSNV-detecting tools, are provided in Additional file 3. MuTect [ 13], Strelka [ 11], and SomaticSniper [ 10] were run in their default settings.
Altogether, we included the following methods for comparison (for corresponding command lines for calling the five algorithms, see Additional file 1): 1. NaiveSubtract — SNVs were called separately from virtual tumor and normal samples using GATK UnifiedGenotyper [ 22].
The core of the CHP process details the tools and command lines for the different steps of the analysis, which in this case consists mainly of different executables of the deepTools package (12), MACS2 (13) for peak calling and two custom scripts.
The download script contains a list of Wget commands, one for each file, which can be executed on the Unix command line for a batch download.
Values specified on the command line for hidden parameters will be used only when the tool is run; they are not recorded in the parameter file.
The last of these, Do Note, is described by Tibbets as "your command line" for everything.
