From the combined sequence information we made a consensus sequences for each gene, which later served as our reference sequence for the 454 pyrosequencing assembly.
Based on previous researches, we combined sequence information, structural information, and functional information as input feature parameters of the Random Forest algorithm for protein folds identification and obtained better results.
Su, N. F., Qian, M. P. & Deng, M. H. Integrative approaches for microRNA target prediction: combining sequence information and the paired mRNA and miRNA expression profiles.
Though generally expected, the higher performance on single-domain proteins further emphasizes the need for developing methods that can optimally combine sequence information from multiple domains along with other information to produce a relatively small set of predicted terms.
This method is based on a linear model that combines sequence information with expression data.
This approach combines sequence information from both haplotypes present in each sample.
CNFpred combines sequence information (a sequence profile) and structure information using a probabilistic non-linear scoring function and is superior to current methods in several respects.
While INTREPID is designed to make use of sequence information alone, it can be used as a component in a prediction protocol that attempts to combine sequence information with other types of information.
However, there is now evidence that an additional level of diversity may also exist by the production of mRNAs that combine sequence information from different genes, also known as intergenic mRNAs.
Finally, we model the distribution of the B allele count b i j T at site (i, j) as a binomial distribution, given G ij, H j and Z j (11) b i j T | d i j T, G i j, H j, Z j ~ Binomial (d i j T, μ ¯ i j ) Now, we combine sequence information from both SCNAs and heterozygous SNP sites.
Combining sequence information from a BAC clone originating from the d2 region with recombination data on the four markers that were identified on this BAC indicated the presence of an inversion in the d2 region in Tift 23DB relative to sorghum.
