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The novelty of the proposed approach relies upon the capability to combine sequences of inner approximations of one-step controllable sets with polyhedral piecewise state-space partitions.
These 7 groups combine sequences from the various model organisms in accordance with previous classification schemes: Group 1) Drosophila Labial (LAB), amphioxus and vertebrate Hox1 sequences.
To smooth some of the noise inherent in sequencing, a 2% single-linkage preclustering step was used to combine sequences likely to be variants from the same source amplicon.
Incorrectly assembled chimeric contigs often combine sequences from multiple members of the same genus, species or strain [ 45– 45].
Only for the Meliphagidae, Callaeidae and Petroicidae were we forced to combine sequences from more than one genus.
In paired-end RNAseq datasets, template switching by reverse-transcriptase can generate chimeric read pairs that combine sequences from distinct transcripts (Roy and Irimia 2008).
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An interesting way of generating novel artificial proteins is to combine sequence motifs from natural proteins, mimicking the evolutionary path suggested by natural proteins comprising recurring motifs.
Graphs of different interfaces are easily compared, especially if one wants to combine sequence and 3D comparisons for choosing the "X" to be mutated.
Finally, a classification can combine sequence and structure distributions.
These databases provide high-quality alignment that combine sequence and structural information.
Here we combine sequence with structural information in just one analysis.
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