Sentence examples for combination assembly from inspiring English sources

A comparison of the percentage of the assembled reads in the combination assembly (81%) to the 454-pyrosequencing and the Sanger-based assemblies (83% and 81%, respectively) indicates that combining the two sequence data did not improve the assembly percentage of each individual sequence dataset (Table 2).

The combination assembly sequence data are available at the NAGRP Aquaculture Genome Projects [ 26].

Distribution profile and percentage of clustered 2nd level Gene Ontology terms of the combination assembly showed high similarity to that of the Zebrafish suggesting an unbiased representation of the combination assembly to the rainbow trout transcriptome.

Gene Ontology analysis of the combination assembly showed high similarities to transcriptomes of other fish species with known genome sequences.

Functional annotation of transcripts of the combination assembly was carried out by BLASTx search against the NCBI non-redundant protein database using the Blast2GO suite [ 31].

A combination assembly of both the 454-pyrosequencing ESTs and the pre-existing sequences resulted in 161,818 TCs (average length of 758 bp) and 261,071 singletons.

The aim of this study was to compare and select the most appropriate NGS technology combinations, assembly protocol and parameter optimization to improve the genome assemblies of the Rhizobium sp. strain CF080 and Burkholderia sp. strain BT03 that originally proved problematic, as well as two other strains, Pseudomonas sp. strain GM41 and Pseudomonas sp. strain GM30 of biological interest.

This pipeline uses a combination of assembly methods, which has been shown to produce assemblies that are superior to any single method, resulting in fewer contigs with shorter cumulative length [ 40].

Therefore, a combination of assembly and sequence similarity methods were utilized to identify transposable elements (TEs) and other repetitive sequences (Table  2, Additional files 2 & 3).

For each combination of assembly parameter values the length of the longest sequence was determined and annotated against homologues in A. thaliana.

It is also possible that the bkbwg region is contiguous and the region in question actually belongs in a different region of the genome but has been placed here by a combination of assembly and mapping errors.