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The arrays were processed in two batches; batch number was recorded as a categorical variable, which was used in ComBat to adjust for inter-array variation [ 26, 27].
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Many find it hard to overcome the trauma of combat, or to adjust to civilian life.
We used the ComBat function to adjust directly for this batch effect [ 45].
We therefore identified two alternative approaches that might be used as compensatory methods: Firstly, Johnson et al developed an empirical Bayes algorithm, ComBat, to directly adjust for non-biological experimental variation.
Nonparametric ComBat was used to adjust batch effects.
Z-score normalization (scale function in stats R package) and ComBat [25] were used to adjust the systematic bias of data sets generated by different platforms.
A YEAR after the United States attacked Afghanistan, more than 9,000 American forces remain inside the country, hunting down remnants of Al Qaeda, building roads and schools, and struggling to adjust from a combat role to what looks more like a nation-building mission.
ComBat used an empirical Bayes method to adjust potential batch effects between two data sets.
An empirical Bayes method to adjust for batch effects [ 36] (ComBat; ) has also been used to integrate published datasets for meta-analysis [ 37].
The ComBat function within the sva package in R was used to adjust the data to remove batch effects.
Keep in mind that you may want to adjust the grade of your land to help combat drainage problems.
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