Because the binding region "G-G-C-H-R" contains two residues of 'G', we extracted the 'G' column of position-specific scores from the standard PSSM (there are a total of 20 columns, corresponding to the 20 standard amino acids).
As the sixth header row indicates, the main body of the response file contains the following ten columns of data: "Position" (in cm), "XX", "XY", "XZ", "YX", "YY", "YZ", "ZX", "ZY", and "ZZ".
Mutual information (MI) was calculated over all pairs of positions (columns) in the alignment, as described in [ 21].
In addition, in each column three different types of positions are discerned: binary (only two character states), asymmetrical (one partition of the split with only one character state, the other with more than one state), and noisy positions (more than one state in each partition).
An in-depth parametric study is then conducted by the proposed method to evaluate a building with outriggers with respect to the stiffness ratio of the core to perimeter columns, position of damped outriggers, and damping coefficient of linearly viscous dampers.
The notation I i denotes a list of the column positions of non-zero entries in row i in H.
The lines represent the position of the cue and columns the position of the responded letter.
move one column from a position to another one, move a set of consecutive columns to another position, swap the position of two columns, reverse the order of a set of consecutive columns, and move and Reverse, i.e. move a set of consecutive columns to another position and in reverse order.
The five basic moves we considered here are: move one column from a position to another one, move a set of consecutive columns to another position, swap the position of two columns, reverse the order of a set of consecutive columns, and move and Reverse, i.e. move a set of consecutive columns to another position and in reverse order.
Scatter from the acrylic holder ranged from 2.5%to2.9%9% and was independent of column positions.
