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The collective sequence data for the Astyanax genome (GenBank Assembly ID GCA_000372685) were downloaded from Ensembl, along with the transcript sequences for 23,042 predicted genes.
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M.R. generated the sequence data.
J.C. and L.L. analyzed the sequence data.
Principal component analysis with genome sequence data.
ARB: a software environment for sequence data.
S.W.C., L.P.T. and S.C.S. generated sequence data.
16S rRNA amplicon sequence data: NCBI SRP071002.
Sequence data will be provided upon request.
Sequence data were aligned to the specified National Center for Biotechnology Information human reference sequence after low-quality sequences were discarded.
Sequence data are available for download from the Sequence Read Archive with accession number PRJNA486795.
We first analyzed sequence data with an automated pipeline developed specifically for three-platform sequencing.
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