For the best 7-mers candidates, we compared the obtained oligo sequences to the entire collection of consensus binding sites available in Transfac professional [23] (release 2010.1) using the compare-pattern script (RSAT-tools) and listed the associated binding factor name.
Although the definitive management is burr-hole drainage of the fluid collection, no consensus exists on which patients may benefit from surgical intervention [ 2, 5, 12, 18, 23].
In principle, the program can be used to annotate any DNA sequences, whether it is a collection of consensus sequences generated through ab initio repeat discovery or genomic sequence.
The identification of RT cores was based on a collection of consensus amino acid sequences of known RT domains available at Gypsy Database (Llorens et al. 2011) and TREP database (http://wheat.pw.usda.gov/ITMI/Repeats/).
Overall, the ACOVE series of indicators were found to most closely fulfil the assessment criteria due to their robust evidence collection and consensus development, and field testing, and update in ACOVE-3.
We named the collection of final consensus reads as 'non-overlapping integrated reads (NOIR)'.
Two abdominal radiologists (SGS and VAS) evaluated all images retrospectively on a picture archiving and communication system workstation using a standardized data collection sheet until consensus was reached.
We also adopted a pragmatic but methodical approach to rapid data collection, analysis and consensus building to add a degree of rigour to the process.
All samples of collection were under consensus agreements, and were approved by the Ethical Review Committee of the World Health Organization Collaborating Center for research in Human Production.
In a collection of 43,141 consensus sequences derived from 260,000 sugarcane ESTs, the redundancy was estimated at 22%, based upon 98% over 100 bp [ 29].
