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If the principle restriction on applicability of this method is depth of coverage, then additionally collected expression data is all that is required to validate and correct larger proportions of the expressed gene models.
We collected expression data of the TFs in 18 different tissues from the gene expression Atlas [ 27].
We collected expression data from previous studies that used a X. laevis microarray prefabricated by Affymetrix [ 86- 88].
In particular, a multiweighted coexpression network, is built on top of collected expression data in order to efficiently represent correlations among genes in high-dimensional expression datasets.
To do so, we collected expression data from tissue samples that were allowed to decay for varying amounts of time prior to RNA extraction.
Breast cancer is the only cancer type in TCGA that collected expression data on a large quantity of tumor-normal paired samples.
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Microarray experiments typically collect expression data on thousands of genes and the high dimensionality of the data impose statistical challenges.
The "Bite-it database" created in 1996 collects expression patterns during tooth development based on patterns in the literature [26].
The yeast dataset collects expression level of 2,884 genes under 17 conditions.
Besides, another GEO series, GSE27991, collects expression data of M. truncatula roots treated with auxin transport inhibitors.
Further, there is the Mouse Atlas of Gene Expression, which collects expression data based on serial analysis of gene expression (SAGE) (16).
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