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Then the slide was immersed in cold lysis solution to lyse the cells.
Slides were incubated in cold lysis solution (Trevigen) for 45 minutes at 4°C.
Cells were washed with PBS and then lysed in cold lysis solution (5 mmol/L of Tris, pH 7.4, 20 mmol/L of EDTA, 0.5% Triton X-100) for 20 min [16].
Beads were collected by centrifugation and washed twice for 10 min at 4°C in cold lysis solution prior to a final wash in cold PBS.
These slides were immersed in freshly prepared, cold lysis solution added with 1% triton X-100 at 4°C for 1 hr in a dark place.
For RNA extraction, 25000 SP and 25000 MP cells were sorted by FACS into cold lysis solution (RNeasy Micro Kit; Qiagen, Venlo, The Netherlands).
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Treated and untreated cells were lysed into ice-cold lysis solution containing RIPA buffer, as previously described [28].
These agarose sample plugs were immersed in ice-cold lysis solution (0.5 M EDTA; 0.01 M Tris; 2% Sarcosyl; 0.2 mg ml−1 proteinase K) for 1 h and then incubated at 50°C for 48 h.
Plugs containing cells were extruded into 1 ml of ice-cold lysis solution (0.4 M EDTA, 2% sodium N-lauryl sarcosine, 1 mg ml−1 proteinase K, pH 8.0) in Eppendorf tubes for 30 min.
We have increased the sensitivity of the assay by embedding the cells in agarose prior to irradiation at 0°C; slides can then be placed in ice-cold lysis solution immediately following irradiation.
Slides were then incubated in ice-cold lysis solution [2.5 M NaCl, 10 mM Tris, 100 mM EDTA, 1% Triton X-100 and 10% DMSO, pH 10.0] at 4°C for at least 1 h.
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