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They produced a co-regulatory coefficient dataset with 3459 TF pairs.
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The water/octanol partition coefficient (LogP) dataset consists of 10,005 compounds with the experimental logP values.
The abbreviations used are: SCC – spearman correlation coefficient, POS - Dataset of interacting proteins, NEG – Dataset of non-interacting proteins, 20p – The version of the dataset containing a maximum of 20% gapped columns.
For example, comparing correlation coefficients of datasets containing a different number of points (via a Fisher transform) loses its correlation-type interpretation of reproducibility.
The R coefficients for datasets 133a and u133p2 are reported.
a Annotations were obtained from Ingenuity Pathway Analysis (Qiagen Inc .. a Number of optimal ceRNA pairs/ceRNAs with significant positive correlation coefficients in corresponding cancer dataset, b Coefficients of variation of number of core ceRNA pairs/ceRNAs among four cancer datasets.
Definition 5 (Data quality evaluation coefficient) Given the dataset D in the time duration T, the data quality Q is the weighted combination of the data quantity, correctness, completeness, and time-related indicator.
A pooled linear regression coefficient combining YFS and FINRISK datasets was formed using a fixed effect model over the two datasets (Thompson et al., 2011), and the P-value was obtained by relating the pooled estimate to its SD.
Table 2 reports the correlation coefficients for each dataset.
Table 4 tabulates the mean and number of coefficients for each dataset.
Most of them use the mean of pair wise distances or the mean of pair wise similarity coefficients to characterize dataset diversity [1].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com