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Both sets of clusters were analysed using the procedure described below.
Enriched GO clusters were analysed using Cytoscape [ 50], in conjunction with the plug-in system BiNGO [ 51] in addition to DAVID (http://niaid.abcc.ncifcrf.gov) [ 52, 53].
Taxonomic profiles of chlamydial proteins based on the obtained clusters were analysed using a Bray-Curtis similarity matrix [ 122] and subsequent cluster analysis with complete linkage using the program PRIMER 5.0.
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The melting behaviour of ovalene (C32H14), hexabenzocoronene (C42H18) and circumcoronene (C54H18) clusters is analysed using molecular dynamics simulations.
The promoter and 3'UTR sequences of genes in the clusters identified using fuzzy c-means clustering were analysed using FIRE software [ 35] and the results of the analysis are shown in Figure 3.
In this paper Sweden's largest chemical cluster is analysed using the total site analysis (TSA) method.
The CPU utilisation of the slave nodes of the Hadoop cluster was analysed using the 'top' command (measures CPU utilisation, process statistics and memory utilisation) while running the LDA algorithm.
8 The influences of hospital policy towards interventions and patient clustering effects were analysed using hierarchical structures.
To investigate how Rgrcs are related, all of the proteins encoded by Rgrcs were analysed using homology clustering.
Since the data of the children are clustered within classes and schools, which are clustered within countries, data will be analysed using multilevel analyses when appropriate.
Similarity between sites based on their faunal composition was analysed using clustering analysis and ordination (PCA).
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