Sentence examples for clusters we calculated from inspiring English sources

To survey whether functionally characterized genes were also arranged in such clusters, we calculated the distribution of functionally characterized genes and compared it with the genomic locations of the QTL clusters (Figure 3).

To distinguish between isolated and linked clusters, we calculated the Pearson correlation between the activities of all cluster pairs.

To obtain the extent and pattern of inter-peptide contact formation present in the individual conformational clusters, we calculated the average probability of inter-peptide residue pair contacts.

To assess the most likely number of clusters, we calculated Δ K following Evanno et al. (2005).

Within each of the 16 STRUCTURE clusters we calculated Fst based on the species present using AFLP-Surv.

Using the same gene distribution as our irrigated field clusters, we calculated cluster means for the PND.

To evaluate the optimal number of clusters, we calculate the clustering evaluation object containing Davies-Bouldin index values and find the minimum criterion value.

In order to make an ideal distribution for sensor node clusters, we calculate the average distance between the sensor nodes and take into account the residual energy for selecting the appropriate cluster head nodes.

To independently evaluate the quality of the clusters, we calculate a Gene Ontology[ 7] based G O S c o r e from the binomial enrichment of GO slim terms, G. (5) G O S c o r e = ∑ k ∑ g G - log (pG O k, g ) where pG O k, g is the enrichment p-value for term g in cluster k.

Therefore, for each clustering, we calculated a Z-score that measures the MI relative to clusterings of similar parameters, but with random assignment of genes to clusters.

Determining the accurate geometrical sizes for the examined cluster, we calculated the spectral response of the structure numerically.