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They include a description of the optimal partition: number of clusters, value of the index used and the assignment of nodes to each cluster.
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This surrogate procedure was repeated 10,000 times and produced 10,000 surrogate clusters (if no cluster was found in one of the surrogates, a cluster value of 0 was assumed for this surrogate).
Interestingly, we see how the clustering suddenly increases as we merge just a few layers: to achieve more than 80% of the final clustering value, we only need to randomly merge together five layers.
What role does this central politician play for the clustering value in Alheim?
The thickness of the connections varies depending on its individual clustering value.
Certainly, the clustering value always depends on the data collection process, but as the study for this article has used the same methodological approach for all five municipal networks, it is possible to compare the municipal clustering values.
The big red node has many incoming and outgoing links, but few triangle relations and thus a low clustering value.
For example, the clustering algorithm employed in this study may result in two structurally similar molecules being grouped into different clusters using a given d thresh clustering value.
Cluster and exponential error is calculated as the percentage difference between measured thickness and either the average cluster value, or the value predicted by exponential regression.
As the RMSD cluster value (as well as N NHA, N R and N ER ) increases, all five conformer model accuracies before and after clustering linearly changed.
If the conformer model had more than 500 conformers after sampling, it was re-clustered with the RMSD cluster value incremented by a further 0.2.
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