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While I used the QPS Que M2 and the LaCie combo drive, a My Music folder copied from Windows would become unstable in the Mac environment: clusters of files in a folder would disappear, then reappear unnervingly.
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The program, which is available for Windows and Macintosh, assembles clusters of related files and associated contact information and presents them in a window.
A STRUCTURE analysis [ 38] http://pritch.bsd.uchicago.edu/structure.html identified four major clusters of accessions (Additional File 1, Figure S1.1-2).
We determined core clusters of samples (Additional file 1: Table S4) based on a hierarchical clustering of this matrix but required samples to co-cluster at least 80 times.
This can explained considering the communication times in the cluster (i.e. copy of files in remote) and the duplication of part of the processing as already explained in "Tie-points extraction" section.
The correlation between nucleosome occupancy and transcription level was also observed when genes were divided into 100 clusters of 50 genes (Additional file 1: Figure S10), but was absent for randomly generated gene clusters (Additional file 1: Figure S11).
Functional classification of the Clusters of Orthologous Groups (COGs) (Additional file 1: Figure S3, Additional file 3: File S5) was implemented to identify orthologous protein sets [ 49].
From these, 773 and 178 clusters were considered isoforms or premature forms of other clusters (Additional files 3 and 4).
Self-organizing map (SOM) clustering across all treatments revealed 3 clusters of expression patterns (Additional file 3).
For this study, 199 isolates were selected at the Municiple Health Service in Amsterdam representing 42 RFLP clusters of various sizes (Additional file 2).
Ds-l4 elements, on the other hand, have variable filler sequences, although their phylogenetic analysis reveals clusters of related elements (Additional File 2, Figure S1).
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