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The responses in the N, H and Q clusters of Figure 2 and Figure 4 support this conclusion.
The tissue specific genes were then tested for enrichment in the different clusters of Figure 3 using Fisher exact test.
The other seven daughters in family 228 were classified into the left two clusters of Figure 1C (family 228 in Figure 2).
For example, given that the red clusters of Figure 2 extend over a large area of the scalograms, this prevents an accurate quantification of the a-wave energy, which is most probably hidden by the higher energy b-wave.
Interestingly, we also found an enrichment of genes involved in developmental processes and fruiting body formation in all four clusters of figure 3 (Fig. 3BA and additional file 2).
In contrast, between-species nucleotide changes showed high proportion of non-synonymous changes for ATPase in the branches of bonobos, chimps and gorillas, but were less frequent in humans (cf. last clusters of Figure 3A and 3B).
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As evident in the clustering of Figure 1, matched pairs were clustered together and further from the unmatched pairs, indicating the differences in the relatedness between the samples.
For the clustering of Figure 8 and the boxplots of Figures 1 6 DNA recovery values (percentage of input DNA) for each histone ChIP were normalized to those of total H3 for the 124 sites analysed.
The genome from this sire, including autosomes and the X chromosome, is responsible for the stratification of the upper-right cluster of Figure 1C (or the right cluster of Figure 1A).
The general topology of the hierarchical clustering of Figure 2 is supported by a separate phylogenetic analysis resulting in a Neighbor-Joining tree (Fig. 4).
The only exception is the γ-proteobacterium Thioalkalivibrio sp. (marked '11' in the γ2 cluster of Figure 2) for which GluRS1 and GluRS2 appear in sister branches within the γ-proteobacterial GluRS2 cluster.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com