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We then carried out co-occurrence analysis in order to obtain clusters of co-occurring keywords expectedly associated to full meaning.
It is recognized that clusters of co-expressed genes are distributed throughout the genome [53].
This suggests the presence of groups, or clusters, of co-regulated trans-eQTLs.
Thus, modules are composed of clusters of co-expressed genes together with their associated regulators.
Thus, HDAC target genes include clusters of co-regulated genes involved in transcriptional repression.
These parameters set a stringent threshold and defined 12 clusters of co-expressed genes.
Multivariate clustering of expression patterns identified 5 clusters of co-expressed compounds with common chemical characteristics.
In a first step, the algorithm is searching for a partition of genes into clusters of co-expressed genes.
Six identical lattices were constructed, each modelling one of the six previously defined clusters of co-regulated genes [9].
Next, DBF-MCL was tested with microarray data to explore its effectiveness in finding clusters of co-regulated genes.
We demonstrated that seriation was able to identify contigs of co-expressed genes that were related to clusters of co-expressed genes obtained by PoissonC (Table 3).
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