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Overlapping clusters are extracted from a PPI network using OCG.
Then, K clusters are extracted using K eigenvectors associated with the K greatest eigenvalues, by the following algorithm [22]: 1. Calculate the similarity matrix S (Equation (5)), its degree matrix D, and normalized Laplacian, L norm (Equation (6)) 2.
Clusters are extracted from the general population in order of their statistical fitness (see Cluster validation).
In the short soft clip cluster pairing stage, the short soft clips from the re-aligned locus of unpaired clusters are extracted from the BAM file.
The correlation value at which clusters are extracted, which we will refer to as the "clustering parameter", is critical for the performance of the method.
Step 8: To provide a more classical representation of the observed effects, relevant parameters representative of functional clusters are extracted and represented in histogram plots.
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The two clusters were extracted by fitting a Gaussian mixture model to the data (n = 433 units from 13 mice).
Using co-citation analysis and VOS methods, 51 safety-related journals and 8 clusters were extracted from the references of the journal Safety Science, which was taken as a representative core journal.
Three major clusters were extracted from all analyzed parameters for the 19 sampling sites (Fig. 12).
In addition to the 3-D periodic planewave DFT models, molecular clusters were extracted from the energy-minimized structures.
After energy minimization of the periodic models, molecular clusters were extracted representative of the monodentate, bidentate binuclear, and outer-sphere configurations by selecting the three Fe-octahedra and H-bonded H2O molecules nearby the chromate of interest.
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