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Comparison of the DEGs with the complete transcriptome evidencing the gene ontology (GO) terms over-represented in all the clusters and separately in each cluster.
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Unsupervised hierarchical clustering showed that, in ARMS cell lines, exosome miRNA clustered together and separately from cellular miRNA (Fig. 2b, right panel).
Hierarchical clustering of differentially methylated probes (DMPs, p = 0.05) showed that DFFs and DFUFs cluster together and separately from NFFs.
Hierarchical clustering analysis of DMPs in the 3-group comparison demonstrated that DFUFs and DFFs cluster together and separately from NFFs, visualized as a heat map (Fig. 2b ).
The exceptions are L. crocea and H. kuda piscidins, which cluster together and separately from the other Acanthopterygii.
In fact, the B lineage ALL samples are all clustered together and separately grouped from T-ALL and AML.
Sequences obtained from the two I. ventalloi from mainland Portugal clustered together and separately from other msp2 sequences obtained from I. ricinus on Madeira Island.
If the inflammatory signature was GER-dependent, woulduld expect the lower esophageal biopsies from patients in the inflammatory subset to cluster together and separately from the upper biopsies.
ESTs from each separate cDNA library were clustered and assembled separately and subsequently the entire set of ESTs for all cDNA libraries were clustered and assembled together.
The remaining nuclear ESTs for each species were clustered and assembled separately.
The raw sequences were clustered and assembled separately for each genotype and also as a combined set using TGICL clustering utility [ 26].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com