Sentence examples for clusters and core from inspiring English sources

Gene clusters and core genes for biosynthesis of secondary metabolites were identified by SMURF [ 55] and antiSMASH [ 94].

The web-based prediction tool SMURF and the antiSMASH pipeline were used to predict secondary metabolic gene clusters and core genes [ 86, 87].

Gene clusters and core clusters for N genomes were calculated, where N is the number of Fusobacterium genomes (N = 1, 2, 3, … 30).

To predict the pan-genome and core genome sizes of L. monocytogenes, we used N genomes to calculate gene clusters and core clusters, where N is the number of L. monocytogenes genomes (N = 1,2,3…43,44).

As functional category has been shown to be related to selection pressure [ 49], we investigated the possibility that functional category could have been a confounding factor in our tests for heterogeneity between pathogen-specific gene clusters and core gene clusters.

We subdivided clusters among 6 functional categories based on COG assignments and computed the odds of positive selection for pathogen-specific accessory gene clusters and core gene clusters (Table 3).

(c) Shell-to-core BE and average core CN versus the ratio of total Au atoms and S atoms in the shells and (d) global minima gas phase Au clusters and cores of Au NCs.

Also a set of core characters may be identified for uniform characterisation in all the silk producing countries; based on which clustering and core collection of silkworm germplasm can be made; core collection will actually facilitate the silkworm breeders in decision making to identify the parents for breeding and also select tester and lines for hybridisation from among the elite accessions.

For orthologous gene clustering and core-genome phylogeny, we also included 49 completed S. aureus genome sequences from the NCBI RefSeq database (accession numbers provided in supplementary table S2, Supplementary Material online).

When all the clusters and their core regions are taken into account, two clusters BSPI and BSPVI showed high similarity and could be considered as one.

When all Salmonella genomes have been considered, there are 10,581 pan gene clusters and 2,882 core gene clusters (Additional file 2) in species enterica.