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In this study, we chose Uclust (Edgar 2010) as the default OTU clustering tool.
Figure 1 shows an example of a similarity hierarchy generated by a similarity clustering tool that is part of the PubChem toolkit [14].
The development of the definitions of counterfeiters, counterfeiting and offender organizations, along with this incident clustering tool, will allow more structured and theoretically based incident reviews.
The DAVID function annotation clustering tool was used for gene ontology (GO) analysis.
The "Functional Annotation Clustering" tool was used to combine significant annotation terms into functional groups (FG) using default parameters.
To elucidate the biological significance we used the DAVID annotation clustering tool and found a parallel reversed functional trend.
In the hippocampus, the functional annotation clustering tool of DAVID generated 68 GO clusters of biological processes out of the differentially regulated genes when comparing ID vs. IS.
To detect significantly over-represented GO biological processes, the DAVID functional annotation clustering tool [13] was used by choosing the 'GOTERM_BP_5' option.
The DAVID functional annotation clustering tool [22] then identified the significantly over-represented biological process each module was involved in (Figure 3).
To assess the layered PPI network in the context of GO, the DAVID functional annotation clustering tool was applied to identify significantly over-represented biological processes (Table 2).
Conversely, insertion sequence (IS) typing by Southern blotting reveals a huge diversity, but it does not provide an appropriate phylogenetic or clustering tool.
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