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Voxels belonging to this region were submitted to a voxelwise unsupervised fuzzy clustering technique as implemented in the BrainVoyager QX Fuzzy clustering plugin [56].
Each image was processed by the ImageJ software using the K-means Clustering plugin.
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The network is clustered by using the Cytoscape cluster plugin.
The BioDICE plugin performs clustering and generates an interactive map.
The cluster significance level of p<0.05 was estimated through Monte Carlo simulation [61] using the BrainVoyager Cluster Threshold plugin.
ClusterMaker is a Cytoscape plugin that implements several clustering algorithms and provides network views of the results [ 54].
Additionally, Cytoscape is extendible via community developed plugins 42 that range from Gene Ontology enrichment 43 to clustering to pathway visualization and analysis.
The network was clustered by using ReactomeFI plugin in cytoscape.
Gene ontology (GO) clustering analysis was performed using Biological Network Gene Ontology (BiNGO) [ 23] software, a Cytoscape plugin available at http://chianti.ucsd.edu/cyto_web/plugins/index.php.edu/cyto_web/plugins/index.php
For additional learning algorithms, there is a plugin available called SAMOA-MOA [150] which allows the use of MOA classifiers and clustering algorithms inside the SAMOA platform.
Further, another cytoscape plugin "clusterMaker" [ 37] was used on the PPI to create clusters using MCL clustering algorithm [ 50].
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com