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Various clustering options are available when the number of clusters is unknown [32].
With this grouping process, performed hierarchically, and depending on the selected algorithm, multiple clustering options are possible.
Each logistic regression model was first tested without adjustment for clustering and then tested with each of the 2 clustering options.
Each analysis was performed using the functional annotation charting and functional annotation clustering options.
While the clustering options of Chipster, Mayday and MeV are very similar, the latter two provide a wider choice of classification tools.
The resulting EST collection was clustered and assembled using the TGICL program under stringent conditions (clustering options were set to group sequences with at least 98% identity in at least 40 nucleotides with no more than 20 nucleotides from the sequence end) to minimize clustering of close paralogs as much as possible [ 79, 80].
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80-20 Retriever www.80-20.com www.80-20.com powerful and quick search tool with a clustering option that sorts similar results into groups.
The organic clustering option groups together genes with common neighbours.
For GO-term enrichment, the functional annotation clustering option was used, with default settings.
We re-examined DAVID output (note that the Functional Annotation Clustering option is used throughout DAVID analysis to reduce gene-level redundancy, an important consideration here).
The table clustering option and streamlined GO-FAT subset of the GO were used for analysis.
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