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Interestingly within the up-regulated genes in the muscle, very clear clustering of terms associated with energy metabolism is observed.
Leximancer software examines the clustering of terms, based on the frequency and co-occurrence of text within sentences and, using terms identified in the text string, identifies the broad concepts captured in each text string.
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Murphy contends that whole clusters of terms in each of these disciplines have taken on new uses in the past fifty years and that these changes have radical consequences for all areas of academia, especially in philosophy of science, philosophy of religion, and ethics.
First of all, one can identify three main clusters of terms' co-occurrences.
Exploring the relational notion of "person" that grounds Confucian philosophy, he pursues a nuanced understanding of the cluster of terms through which Confucian role ethics is expressed.
Each one also includes a unique cluster of terms related to a key theme: economic challenges on one card, world affairs and geography on another, famous figures on a third and so on.
Western philosophers have endlessly analyzed and dissected a cluster of terms thought to be central to our thinking, e.g., 'good', 'right', 'being' (to be), 'know', 'believe'truerue'beautiful'ul'reason'on'changenge'subject'ct'mind'nd'meaninging'refer',r'object'ct'propertyrty', and so forth.
No clusters of terms related to immune responses (such as immune response, response to virus, defence response, etc)., were enriched amongst the up-regulated genes that exhibited at least a 1.5 fold change in expression.
The second occurrence of a cluster of terms was identified automatically and discarded in the analysis.
Term map: The term map (figure 3A) shows five clusters of terms that are used in patient safety literature.
Additional File 2 shows a table listing enriched clusters of terms using the DAVID functional annotation clustering approach, which gives a higher level perspective of functional term enrichments.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com