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Phylogenetic trees were constructed for the different segments of each recombinant using the NJ method, and bootstrap values for 1000 replicates were used to assess the support for clustering of segments with strains of different genotypes.
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System 4[18] consists of three decoupled elements: speech/non-speech segmentation, acoustic change detection, and clustering of speech segments.
The results obtained show that the GA is able to group SSWH in a specific cluster of segments and that the MOEA obtains ANN models able to perform an acceptable prediction of these SSWH.
We identified 38 OP-type clusters of segments that differ in their compositional spectrum (CS) organization.
The enzyme sequence diversity of the secondary metabolic pathways was examined by identifying clusters of segments associated with certain enzyme groups in the resulting map.
We took into account the clustered nature of the data (i.e., the fact that there were not 420 independent vessel segments but instead clusters of segments in 30 patients).
This exploratory technique identifies and delineates landscape types using a combination of segmentation of a grid of local patterns with clustering of the segments.
Clustering was determined using donor rather than recipient genome coordinates, since rearrangements between the two genomes otherwise caused the spurious appearance of clustering or independence of segments in several clones.
Pilot hierarchical clustering of the segments (Additional file 1 Fig. S1) suggested the existence of 3-8 major clusters in the data.
In our previous study [ 14], oligonucleotide compositions of eight segments also were separately analyzed, and this showed clear host-dependent clustering of each segment on oligonucleotide BLSOMs, even thought the length of the shortest segment (segment 8) is approximately 0.8 kb.
To identify regions of shared ancestral background, we clustered segments of observed polymorphisms using a two state hidden Markov model.
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