The remaining genes, when analyzed using the Database for Annotation, Visualization, and Integrated Discovery (DAVID [33], fell into four clusters of categories: oxidoreductases, taurine and sulfur metabolism associated genes, membrane proteins, and flagellar and chemotactic genes.
There was a cluster of categories all concerned with relationships.
The responses were converted into importance-based clusters of categories (low- (1 2), medium- (3 5), and high- (6 7) importance categories).
We divided the clustering into eight distinct clusters of categories, labeled A H, each contributing significant information to the overall interpretation of results.
Using inductive qualitative content analysis [ 20], two researchers (JNH, KMW) read and coded the transcripts independently and after discussion reached consensus on identified categories and clustering of these categories into three themes.
We have examined several methods for grouping GO categories when assigning SWs including grouping by (i) GO hierarchy (i.e. BP, CC and MF) (ii) GO hierarchy and number of annotations (iii) clustering of GO categories based on annotations and (iv) ancestor and descendant terms with ancestors having a maximum category size (300 annotations).
Overall, these data indicate strong spatial clustering of animate categories in the macaque STS with a surprisingly marked distinction between faces and bodies within body-selective regions which was stronger than between manmade objects and bodies.
However, we did find a clustering of the categories at the higher end of the VAS, as reported by Badia.
Genotype calling for each SNP was rechecked manually and rescored if necessary to optimize clustering of progeny categories.
In particular, the results show that peaks are not determined by similar clustering of given categories of metastasis and suggest that the different timing of recurrences is generated by factors influencing the metastatic development regardless of the seeded organ.
