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CD-HIT uses a heuristics based on statistical k-mer filtering to speed up clustering calculations.
Heatmaps were constructed with the heatmap.2 R package using default parameters for distance and clustering calculations.
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A series of coefficients was introduced in the converting and clustering calculation, such as ( k ) and ( b ) in converting function ( mwr_{ij}^ = k times mwr_{ij} + b ), ( p_k ) in Eq. (4), ( p_k ) and ( p_pri ) in Eq. (5).
Output: We sent the processed data to the mixture of linear regression (MLR) clustering calculation.
First principles cluster calculations of MgO 001)//M 001) (M=Sc to Cu) interfaces have been systematically made using numerical atomic orbitals as basis functions.
However, one of the significant shortcomings of this hot spot method is that Nnh clustering does not take temporal values into its clustering calculation (Chainey and Ratcliffe 2005).
We recalculate the connectivity indices for that network according to Equation 2, and the new results are shown in Figure 9. Here, each green writing over the nodes represents the battery power level (percentage) of that node at the time that the clustering calculation is done.
The dendrogram is visualizing the result of a hierarchical clustering calculation of the mobilome.
Caldarelli et al. [ 9] formulated an algorithm to consider rectangles (four interacting nodes) in the clustering calculation, and called it the grid coefficient.
The key steps of the creQTL approach are: gene clustering; calculation of each sample's similarity to each cluster; and statistical testing of how well genotype explains the similarity.
A PCA was applied on the overall dataset and visualized in a two-dimensional plot (see Additional file 2: Figure S1A), also a dendrogram was created to visualize the result of a hierarchical clustering calculation of the mobilome (see Additional file 2: Figure S1B).
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