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At the condensed FCM, after the initial 52 concepts clustering, a total of 26 concepts with 145 connections among concepts were obtained.
After sentence clustering, a total of 494 clusters were obtained and used as an alternative approach to statistically characterize the sentence patterns.
After doubling the sample to adjust for clustering, a total of 27 schools per group were adequate to detect this difference in laboratory-confirmed influenza with 80% power and 95% confidence.
From the twelve datasets, all ESTs were compared to generate groups of identical/homologous sequences (sequence clustering): a total of 465 clusters were identified, each containing at least 4 (arbitrary defined) and up to 90 sequences.
Using a 97% cut-off during sequence clustering, a total of 137 OTUs were detected in the 24 root systems, which is significantly higher than what have been observed in earlier diversity surveys of root associated fungi in arctic-alpine plants and environments [ 20, 47- 52].
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When all the unique, reliable, and significant signatures (≥4 TPM) from the four libraries were clustered, a total of 37,532 unique signatures were obtained.
The ESTs generated in this project were assembled and clustered a total of four times: In assembly # 1 the non-normalized tissue-specific libraries CAYC and CAYF were assembled and clustered together, as has been previously reported [19].
The UniSeqs were clustered into a total of ∼23K clusters by EST2uni (Table 4), ∼3.5K more clusters than from the JGI analysis (Table 3), a result likely to be related to higher clustering stringency used in assembly #4 (see Methods).
All these EST sequences and other publicly available ESTs in rainbow trout have been included on a publicly available Website (SIGENAE) and have been clustered into a total of 52 930 clusters of putative transcripts groups, including 24 616 singletons.
Predicted proteins from Taphrina genomes were clustered into a total of 10,356 gene families using OrthoMCL.
Initially, these showed a combined total of 159,748 proteins, of which 148,254 (∼93%) were clustered into a total of 10,320 inferred OGs by OrthoMCL.
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